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Hi Elad,
you could export cell data from PetraSim ("File --> Write Mesh Data..."). That gives you a text file with cell ID and cell center (x,y,z) information. If you got a permeability factor information for each cell location and put that in the same order as cell ID you can import in PetraSim via "Model --> Set Cell Data...". this works for material types and perm. factor.
Hope that helps,
Julia